The many stages of writing a paper, and how to close the deal.

[tl;dr] Producing a piece of research for publication has many stages, and each stage has different needs, requiring different ways of operating. Learning these stages is a key developmental step for a graduate student. In what follows, I describe this process.

Caveat: this is obviously customized to more theoretical-style work, although I'll talk about how experimental evaluation fits in, in the context of my work. So YMMV.

From my conversations with students (mine and others), I think this accurately describes how students think a paper gets written:

1. Advisor produces problem miraculously from thin air. 
2. Come up with solution.
3. Write down solution
4. Advisor makes annoying and mystifying edit requests on irrelevant introductory stuff, while throwing out long complicated proofs (or experiments) student has spent many hours sweating over.
5. Make final edits and submit paper.

Most student figure out  how to do 2) , and eventually learn how to do 3) (which is itself a topic for another post). 5) is probably the first thing students learn how to do: fix typos, edit latex, and generally do yak-shaving.

But step 4) is perhaps the most mysterious part of the writing process for a new researcher, and the least structured. I call it "closing the deal" and it's really about going from a bag of results to an actual submittable paper. 

Let me elaborate.

1) Coming up with a problem.

    Of course coming up with a problem is the essence of the research process ("it's about the questions, not the answers", he shrieks). This takes experience and vision, and can often be changed by things you do in stage 4. I'll say no more about it here.

2) Solving a problem.

    This is the stage that everyone knows about. That's what we do, after all - solve problems ! This is where we drink lots of coffee, live Eye of the Tiger montages, get inspiration in our sleep, and so on. 

   It often happens that you don't exactly solve the problem you set out to attack, but you make many dents in it, solving special cases and variants. It's important to be flexible here, instead of banging your head against a wall head-on. At any rate, you either exit this stage of the project completely stuck, with a complete solution, or with a collection of results, ideas and conjectures surrounding the problem (the most typical case)

3) Writing it all down.

   Again, I could spend hours talking about this, and many people better than I have. It's a skill to learn in and of itself, and depends tremendously in the community you're in.

4) Closing, or getting to a submission.

    But this is the part that that's often the most critical, and the least understood. I call it "closing the deal": getting from 80% to 100% of a submission, and it requires a different kind of skill. The overarching message is this:

A paper tells a story, and you have to shape your results - their ordering, presentation, and even what you keep and what you leave out - in order to tell a consistent and clear story. 

(before people start howling, I'm not talking about leaving out results that contradict the story; that would be dishonest. I'm talking about selecting which story to tell from among the many that might present themselves)

So you have a bag of results centering around a problem you're trying to solve. If the story that emerges is: "here's a problem that's been open for 20 years and we solved it", then your story is relatively easy to tell. All you have to do is explain how, and using what tools. 

But in general, life isn't that easy. Your results probably give some insights into the hard core of the problem: what parts are trivial, what directions might be blocked off, and so on. 

Now you need to find/discover the story of your paper. You can't do this too early in the research process: you need to explore the landscape of the problem and prove some results first. But you shouldn't wait too long either: this stage can take time, especially if the story changes.

And the story will change. One way of thinking about what you need for a conference submission is a relatively tight, compelling and interesting story. While the loose ends and unexplored directions are probably the thing most interesting to you and your research, they are best left to a conclusions section rather than the main body. What the body should contain is a well-thought out march through what you have discovered and what it says about the problem you're solving. In doing so, you will find yourself making decisions about what to keep, and what to leave out, and how to order what you keep. 

And so, speculations need to be made into concrete claims or triaged. Experiments need to be run till they tell a definite story. Introductions need to be made coherent with the rest of the paper. There's also an element of bolt-tightening: making the bounds as tight as possible, stating claims as generally as makes sense for the overarching story (if your story is about points in the plane, then stating some claims in a general metric space might not always make sense). 

And all of this has to be done to serve the overarching story that will make the most compelling paper possible. The story can change as new results come in, or expand, or sometimes even die, (but this latter is rare). But there is this constant drumbeat of "am I getting closer to a submission with a nice story with each step".

Telling a good story is important. For someone to appreciate your paper, cite it, or even talk about it (whether it's accepted, or on the arxiv) they have to be willing to read it and retain its results. And they'll be able to do that if it tells a clear story, which is not just a union of results. 

SODA 2014 travel awards and other news

Via Cliff Stein and Kirsten Wilden:

The SIAM Symposium on Discrete Algorithms (SODA14) will be held January 5-7, 2014 at the Hilton Portland & Executive Tower in Portland, Oregon, USA. Algorithm Engineering and Experiments (ALENEX14) and Analytic Algorithmics and Combinatorics (ANALCO14) will be co-located with the conference on January 5 and 6, respectively.
 The deadline for students to apply for travel support is approaching!   The NSF, Google, IBM Research, and Microsoft Corporation have provided generous travel support for students interested in attending SODA14 or its associated meetings, ALENEX14 and ANALCO14. Application materials and a letter of recommendation from your advisor are due by November 15. Please visit http://www.siam.org/meetings/da14/tsupport.php for detailed funding information and application procedures.

Pre-registration for all three meetings is also available at http://www.siam.org/meetings/da14/reginfo.php.

Additional conference information is available at the following websites:
SODA14:  http://www.siam.org/meetings/da14/ANALCO14: http://www.siam.org/meetings/analco14/ALENEX14: http://www.siam.org/meetings/alenex14/

FOCS Reception sing-along

Tomorrow night at 7:30 (before the FOCS business meeting at 9), the Positive Eigenvalues will be playing a live set for the entertainment of  FOCSers. 

Who are the Positive Eigenvalues, you might ask ? Well, you'll have to come and hear us to find out :). Two of the songs we're playing are compositions by our resident philosopher/graphic novelist/keyboardist/composer/complexity theorist, Christos Papadimitriou.

The first is a riff off the Dylan song "Man gave names to all the animals", with the same tune but different lyrics. If you're so inspired, you're encouraged to sing along to the chorus (which repeats after each verse). It goes like this:

Chorus: 
Theorists gave names to all the classes
in the beginning, in the beginning
Theorists gave names to all the classes
in the beginning long time ago 

Verse 1:
They saw a woman slim and tall
forging steadily to her goal
she went by fast but that's no crime
uh I think I'll call her PTIME

Verse 2:
They saw a kid who soldiered on
he got no rest from dusk to dawn
he kept sweating in the same place
uh I think I'll call him PSPACE

Verse 3:
They saw a blind man comb his shack
to find his walkstick in the black
but once he found it he could see
uh I think I'll call him NP

Verse 4:
They saw a boy who walked and walked all night
never veered to the left or right
was kind of slow but not that bad
uh I think I'll call him PPAD

Verse 5:
There was a beast and on its back
it carried Heisenberg and Dirac
it was as weird as a beast can be
uh...

For more on the tailed off line at the end, see the wikipedia entry.

The second song is an original composition by Christos in rock ballad/power rock mode. The lyrics speak poignantly about the life of a theoretician:

In Theory

Verse
Think of a carpenter of sorts
he has the flu he has the blues
He burns his oil every night
all night frustrated and confused

Bridge
And worst of all he can't complain
In theory his job is plain  (twice)

Chorus
Build something sturdy and beautiful and useful
He's always short in one goal
He juggles true with elegant and useful
and he keeps dropping one ball

Verse 2
His buddies like him alright
except they love to criticize
They go and take his stuff apart
with clever words with clever eyes

Verse 3
Some nights a girl comes to his shop
to sip his tea learn something raw
his foggy mind his tangled soul
want her to stay but let her go

Searching randomly for needles.

Suppose you're given a large set of objects $X$, and you know that some subset $I$ is "interesting". A particular example that hits close to (my regular) home is in bug-testing: $X$ is the set of possible inputs to a program, and $I$ is the set of inputs that generate bugs (this is the downside of talking to +John Regehr too much). We'll assume that if you're given a candidate object, you can check easily if it's interesting or not (for example, by running the program)

You'd like to find the interesting items, so you consult an expert (in our running example, maybe it's a method to generate inputs that test certain kinds of bugs). The expert produces items that it thinks are interesting. But experts have biases: maybe your expert only cares about certain kinds of interesting items.

So you ask multiple experts, in the hope that their biases are different, and that together they can cover the space of objects. But you don't know anything about their biases except what you can learn from repeatedly asking them for candidate objects.

What's your strategy for asking questions so that at any stage (say after asking $N$ questions), you've found the optimal number of interesting items ?

This was the topic of a talk by +Sebastien Bubeck at the AMPLab in Berkeley on Tuesday, based on this paper.  A key idea in the algorithm design is to make use of estimators of "things I haven't seen yet", or the famous Good-Turing estimator (which your humble blogger wrote about many æons ago). Here's how it works.

Formally, let us assume that each "expert" $i$ is a distribution $P_i$ over $X$. At each step, the algorithm will determine some $i$, and ask it for a random draw from $P_i$. Suppose we knew the fraction of items that $i$ had not seen yet. Then a simple greedy strategy would be to pick the $i$ that had the largest value of this "not-yet-seen" quantity. That's all well and good, as long as we know the fraction of items not yet seen.

Here's where the G-T estimator comes in. What it says is that if we're given samples from a distribution, and count the number of items in the sample that occurred exactly once, then this "frequency of frequency", divided by the number of samples, is a good estimate for the mass of items not yet seen. Moreover, it can be shown that this estimator has good concentration properties around the true answer.

So that's what the algorithm does. It maintains estimates (for each expert) of the mass not yet seen, and in each round picks the expert that maximizes this term, corrected by an adjustment coming from the tail of the concentration bound.

The algorithm is really simple, and elegant. The question is, how well does it do ? And now things get a little harder. The above ideal greedy strategy is optimal as long as the supports of the experts are disjoint. Under the same assumption (and some other technical ones), it can be shown that the expected difference between the number of items found by the algorithm and the number found by the ideal greedy algorithm is $O(\sqrt{Kt \log t})$ where $K$ is the number of experts and $t$ is the current time step.

It's not clear how to extend these bounds to the case when supports can overlap (or rather, it's not clear to me :)), but the authors show that the algorithm works quite well in practice even when this assumption is broken, which is encouraging.

Progressively complex representations for graphs

After NIPS last year, I had posted a note on the evolution of data models and how we think about the "shape" of data. In brief, we have increasingly complex ways of thinking about the (geometric) shape of data that carefully balance the need for expressivity and the ability to determine the parameters of the representation efficiently.

There's a basic fact of data analysis that you come up against once you start playing with data. Either you endow the space with a geometry, or you endow it with a graph structure (and of course, nowadays you might throw in a spherical cow or two). And there are only a few ways to mix the representations (spectral methods being one such approach).

But as far as I know, there are no standard ways to create a layered representation of graphs to model increasing complexity and expressivity in a similarly balanced manner. There are of course an infinite number of ways to parametrize graphs by quantities that capture increasing complexity (treewidth, connectivity, expansion, induced metric structure, and so on). But I don't know of any established and standard ways to model families of graphs with increasing complexity that capture data patterns of interest.

One of the things that I've been tasked with (along with Peter Richtarik and Han Liu) is to draft out a report on the activities at the big data program at Simons this semester. We're looking also at challenges in the theory of big data, and in my mind coming up with good models for graph structures that capture the intricacies of real data is one of them.

Call for tutorials at SIAM Data Mining

I'm the tutorials chair for the 2014  SIAM conference on data mining (SDM) (for readers not aware of the data mining landscape, SDM is a SODA-style data mining conference run by SIAM - i.e it's a CS-style venue with peer-reviewed papers, rather than a math-style conference like SIAM discrete math). SDM is one of the major venues for data mining research, especially the more statistically focused kind. It will be held in Philadelphia between Apr 24-26, 2014.

SDM runs 4-5 tutorials each year on various aspects of data mining (ranging from theory/algorithms to specific application areas). I'm personally very interested in encouraging submissions from people in the theory community working with data who might want to share their expertise about new methods/techniques from theoryCS land with the larger data analysis community.

The deadline is Oct 13, and all you need is a few pages describing the tutorial content, target audience, and some sample material (more details here). If you have an idea and are not sure whether it will fit, feel free to email me directly as well.

SIGACT CG Column: Moving heaven and earth

My new column for SIGACT News is up (non pay-walled version here). In it, I discuss two different ways of defining distances between distributions.

The earthmover distance is a familar measure to TCS folk, and the kernel distance (or the maximum mean distortion, or the distance covariance) is a familiar character in machine learning and statistics.

It turns out that while statistically, these are not as different as one might think, they are different when it comes to computing them, and understanding their geometry.

The column describes both measures and their properties, and does a compare-contrast between them. More generally, I try to describe how one should think about the process of constructing a distance function between two distributions.

Life at Simons

There have been many posts on the technical talks happening at Simons (see +Moritz Hardt's latest on gradient descent if you haven't yet). Not as many yet on the less-formed discussions that are happening in and around the building, but maybe it's too soon for that.

In the meantime, I thought it might be fun to describe "a day at Calvin Hall".

I usually bike in after 9 am. Biking in Berkeley is not for the (literally) weak-kneed, and I'm discovering how weak my knees actually are. I haven't yet found a good site to plot elevation gains and losses for an arbitrary route, but this one is pretty decent.

The Institute lends out bikes if you don't have your own. It's a great way to get around if you're staying near campus, because parking is difficult and expensive.

Of course, the next step is:

It's a great machine. Only downside is that it shuts down at 5pm when the building does. But there are plenty of cafes around for later.

Then of course the decision: which talks should I feel guilty about missing today ? There are A LOT OF TALKS going on at the various workshops/boot camps. I feel embarrassed complaining about this, because we have such a stellar crowd of speakers and such fascinating talks. But there are almost too many talks: I have to shut down the feelings of guilt in order to find big chunks of time to think (or write this blog post <ahem>).

Thankfully, there's the live stream. I've already mentioned the Simons livestream on G+, but it's worth mentioning again. If you're late to the start of any talk you can watch it on the high quality live feed. If you can't watch it live you can watch it as soon as it's done on the Ustream site for the event. And a few days after that the talks are archived on the Simons site directly. There's also this cute feature where the live stream plays the most recent talk during coffee breaks. I know people outside the Institute are watching talks live because someone pinged me on twitter to ask the speaker to repeat questions they get from the audience.

So I've either attended talks or I've spent the morning brainstorming on some of the projects I have going. It's now time for lunch: thankfully, we're walking distance from both Northside and Southside Berkeley, which means a huge variety of eating places all within 5-10 minutes walking. All we need to do is avoid the huge class let-out at 12:20 or so. On Tuesdays we have a lunch seminar (organized by +Moritz Hardt) as part of the big-data program.

Once we're back, it's time for this:

Did I mention that the coffee machine is awesome ?

Usually, discussions start picking up in the afternoon, and you'll often find me here:

3:30 is time for the daily tea, at which we get all kinds of nice cookies, and the occasional cake/ice cream (on thursdays). This is much like the Dagstuhl tea time, but without the fancy tortes (hint hint!). Of course, no daily tea is complete with the addition of this:

By five, people are starting to trickle out slowly. On Tuesdays we have a happy hour at a local bar ($3 pints!). And it's time for me to check the sad state of my knees for the ride back, which is hard because it's uphill both ways !

More camping with high dimensional boots...

I discovered today that you don't have to wait for talk videos to be posted on the Simons website. All videos are live streamed via ustream, and they have their own channel for the boot camp talks, where you can watch the videos immediately after they're streamed.

Martin Wainwright gave a 3 hour presentation on high dimensional statistics. Michael Jordan's talk earlier was good preparation for this, just to get familiar with basic concepts like the risk of an estimator and minimax theory.

Wainwright's talks were much denser, and it would be hard do an intelligent summary of the entire presentation. The central theme of his talk was this:

In classical statistics, we can evaluate the quality of an estimator as $n \rightarrow \infty$ using standard asymptotic methods, and for the most part they are well understood (convergence, rates of convergence, sampling distributions, and so on). But in all these results, it's assumed that the data dimensionality stays fixed. Suppose it doesn't though ?

In particular, suppose you have a situation where $d/n \rightarrow \alpha > 0$ (this notion was first introduced by Kolmogorov). For example, suppose $\alpha = 0.5$. What happens to the behavior of your estimation methods ?  He worked out a few simple examples with experiments to show that in such cases, classical asymptotic bounds fail to capture what's really going on. For example, suppose you wanted to estimate the mean of a distribution and you used the sample mean, relying on the central limit theorem. Then it turns out that in the $d/n \rightarrow \alpha$ regime, the convergence is slowed down by the parameter $\alpha$.

Another example of this problem is estimating the covariance of a matrix. Assume you have a sample of iid Gaussian random variables drawn from $N(0, I_{d \times d})$, and you want to use the sample covariance to estimate the population covariance (in this case, the identity matrix). You can look at the distribution of eigenvalues of the resulting matrix (which you expect to be sharply concentrated around 1) and in fact you get a much more spread out distribution (this is known as the Marcenko-Pastur distribution). You can show that that the maximum singular value of the matrix is no bigger than $1 + \sqrt{d/n}$ with high probability. But this error term $\sqrt{d/n}$ does not go away.

If the data is indeed high dimensional, is there low-dimensional/sparse structure one can exploit to do inference more efficiently ? This gets us into the realm of sparse approximations and compressed sensing, and he spends some time explaining why sparse recovery via the LASSO is actually possible, and describes a condition called the "restricted null space property" that characterizes when exact recovery can be done (this property is implied by the RIP, but is strictly weaker).

In the second part of the talk he talked more generally about so-called regularized M-estimators, and how one might prove minimax bounds for parameter estimation. Again, while the specifics are quite technical, he brought up one point in passing that I think is worth highlighting.

When doing parameter estimation, the "curvature" of the space plays an important role, and has done so since the Cramer-Rao bound, the idea of Fisher information and Efron's differential-geometric perspective. The idea is that if the optimal parameter lies in a highly curved region of loss-parameter space, then estimation is easy, because any deviation from the true parameter incurs a huge loss. Conversely, a region of space where the loss function doesn't change a lot is difficult for parameter estimation, because the parameter can change significantly.

Once again, this is in sharp contrast to how we view the landscape of approximations for a hard problem. If we have a cost function that varies gently over the space, then this actually makes approximating the function a little easier. But a cost function that has sharp spikes is a little trickier to approximate, because a small movement away from the optimal solution changes the cost dramatically.

There are some problems with this intuition. After all, a sharp potential well is good for gradient descent methods. But the difference here is that in estimation, you only care about the loss function as a tool to get at the true goal: the desired parameter. However, in much of algorithm design, the loss function IS the thing you're optimizing, and you don't necessarily care about the object that achieves that optimal loss. This goes back to my earlier point about the data versus the problem. If optimizing the loss is the end goal, then a certain set of tools come into play. But if the goal is to find the "true" answer, and the loss function is merely a means to this end, then our focus on problem definition isn't necessarily helpful.

Statistics, geometry and computer science.

Geometry is the glue between statistics and computer science. -- Michael Jordan

That's why everyone gets stuck in it. 
-- Graham Cormode

Today Yesterday was the first day of the "Big Data boot camp" at the Simons Institute. The idea behind these boot camps is to get participants in a program "on the same page". In a program like ours, with statisticians. ML folks, algorithms people and optimizers all mingling together, getting "on the same page" with "the same language" is critical. For a more general overview of the first day activities, see Muthu's post.

Michael Jordan opened the proceedings with a talk titled "Big Data: The computation/statistics interface". From a CS perspective, it was an excellent talk that hit just the right level of detail for me to grasp some basic terminology in statistics, as well as understand some of the questions people are pondering right now.

We think of big data as a PROBLEM. More data, more scaling issues, O(n) becomes infeasible, and so on. In particular, we think of large data as a workload that taxes our resources: time, space, communication, and so on.

Michael presented a counterpoint. From a statistical perspective, more data is better. Estimators converge, error reduces, and the law of large numbers kicks in. Rather than treating data as something that we have to manage efficiently, can we think of data (quality) as a resource itself that can be managed efficiently ? In other words, can we tradeoff estimator accuracy against other resources ?

He proceeded to give a wonderful exposition of the basics of statistical decision theory, including the frequentist and Bayesian views of estimator risk. Along the way, he described a geometric interpretation of the James-Stein estimator which is too neat to skip.

The James-Stein estimator is really a very counterintuitive object. Consider a set of samples $X_i \sim N(\theta_i, 1), i \le n$, where the $\theta_i$ are unknown parameters. The goal is to sample $X_i$ to determine the $\theta_i$, by minimizing some loss function $\sum (\theta_i - \hat{\theta_i})^2$. The $\theta_i$ are assumed unrelated to each other.

The "obvious" estimator is $\hat{\theta_i} = X_i$. It's the MLE after all. But it turns out that this estimator is strictly dominated (in terms of expected loss aka risk) by the so-called shrinkage estimator:
\[ \hat{\theta_i} = (1 - \frac{c}{S^2}) X_i \]
where $S = \sum_j X_j^2$.

What's surprising about this is that the estimator for a single $\theta_i$ takes into account samples from other $X_i$, even though the $\theta_i$ are assumed to be unrelated.

It turns out that there's an elegant geometric interpretation of this estimator, first attributed to Galton by Stephen Stigler. Consider the pairs $(X_i, \theta_i)$ as points in the plane. We don't quite know where these points lie because we don't know what $\theta_i$ is. Because the $X_i$ are normally distributed around the $\theta_i$, each point is really a horizontal interval of interest.

Now the standard estimator $\hat{\theta_i} = X_i$ arises from trying to solve a regression problem of $X$ versus $\theta$, or more precisely solving the regression $\hat{X} = E(X\mid \theta)$. But really, what we're trying to do is solve the regression $\hat{\theta} = E(\theta \mid X)$. In other words, regression of $y$ against $x$ is different from the regression of $x$ against $y$, as long as we have more than three points. And this is precisely what the JS estimator says.

Returning to the question he started the talk with, can we show a formal tradeoff between data estimation accuracy and sampling cost ? In a recent paper with Venkat Chandrasekharan from Caltech, they show a very nice (and counterintuitive) result: that using a cruder relaxation of an optimization problem can actually lead to more efficient estimation as long as you have sufficient data. Note that this goes against the standard idea that a crude relaxation is "worse" in an approximation sense.

The idea is as follows. Consider the very simple problem of denoising where the observations $\mathbf{y}$ are generated from the input $\mathbf{x}$ by a noise perturbation:
\[ \mathbf{y} = \mathbf{x} + \sigma \mathbf{z} \]
where $\mathbf{z}$ is normally distributed. Let us assume that $\mathbf{x}$ is drawn from some set $S$ (for example, $S$ is the set of low-rank matrices, or the set of permutation matrices).

The simplest estimator for $x$ is an $\ell_2$ projection: compute the sample mean $\overline{\mathbf{y}}$ and then find its projection onto $S$. But this involves a minimization over $S$, which might be intractable.

We can relax $S$ to some $S'$, where $S \subset S'$ and minimization becomes easier. But this would worsen the approximation ratio of the optimization depending on the relaxation. And here's where the insight comes in.

Suppose you instead look at the statistical risk of this estimator. In other words, look at the expected difference between the true $\mathbf{x}^*$ and the estimated $\hat{\mathbf{x}}$. The main result they show in this paper (paraphrased) is

 expected risk is upper bounded by (C/n) * geometric complexity of $S, \mathbf{x}^*$

where $n$ is the number of samples.

Suppose we fix the desired risk. Then an increase in $n$ can be used to "pay for" increased "geometric complexity". And here's where the final idea comes in. The "geometric complexity" used here is the Gaussian-squared complexity, which is defined as
\[ g(D) = E[ \sup_{x \in D} \langle x, z\rangle^2 ] \]
where $z$ is normally distributed.

In particular, the set $D$ used in the above expression is the set of directions from $\mathbf{x}^*$ to points in $S$. Suppose $S$ is very "pointed" at $\mathbf{x}^*$. Then the Gaussian-squared complexity is small and the number of samples needed is small. But if instead we use a relaxation $S'$ that is "blunt". The Gaussian complexity goes up, but if we have more samples, that keeps the risk fixed. If the optimization for $S'$ is significantly easier than the corresponding problem for $S$, then we still win, even though $n$ has increased, and even though the classical "approximation ratio" might have become worse.

In the final part of his talk, Michael talked about his recent work on "bags of little bootstraps", which Muthu also covered in his post. This post is already too long, so I'll defer this to another time.

And now for something different...

People who know me through my blog probably assume I have no life at all outside blogging and big data.

oh wait...

But more seriously, my family is here with me during this sa-battle-cal and +Karen Ho is ably keeping up the non-work blogginess. If you're interested in our adventures outside big theories of data, check out her blog Simply Batty: you might even learn what "academic headcheese" is.

On "a theory of big data"

+Moritz Hardt kicked off our Simons big data program with an excellent rumination on the role of theory in "big data". Some followup thoughts:

Moritz makes the point that theory, for better or for worse (mostly for better) made the choice to give problems primacy over data. I harp on this a lot in my algorithms class, and also talked about this in the context of computational thinking: the idea of 'naming a problem' is a key intellectual contribution of theoryCS. 

But to look at what might happen if we allowed more flexibility in problem definition, we don't have to look too far. Machine learning (a discipline that faces data head on) is characterized by the study of problems that are well defined in the broad sense, but have a lot of wiggle room in the specific (and I'm now hoping +Sebastien Bubeck will respond and critique what follows)

Consider classification. In a broad sense, it's very well defined: given a collection of points labeled with (1,-1), find a decision rule that can be used to separate the +s from the -s. But in the specifics: what's the decision rule ? what's the penalty for making a mistake ? how much labeled data do we have ? does it cost us to get labels ? and so on.

For each possible answer to these questions, you can construct a well defined problem. And you could focus on solutions to that very well defined problem. But that's not particularly important. Maybe I use hinge loss to capture errors in my classification, or maybe I use some other error function. I don't care as much as I care about a formulation that allows me to solve different flavors of the problem using  a single paradigm: possibly some form of gradient descent. 

This theme shows up again and again. In clustering. In regression. In the different flavors of learning (active, semisupervised, transfer, multitask, ...). A good solution to a problem focuses not on the specific definition, but a general framework that captures different variations on the problem and reduces them to solving some optimization that can then be engineered. This is also why optimization (and understanding heuristics for optimization) is such a focus on machine learning (Bubeck's lecture notes are a great resource on this, btw)

There is of course a downside. The downside is that you (could) miss out on connections between problems: the reductions that are the lifeblood of work in theoryCS. In fact, John Langford has looked into this issue specifically, with his machine learning reductions project.

So returning to the original question, what should a theory of big data look like ? A big part of theoryCS research is the skillful management of resources (space, time, random bits, communication, what have you..). But an even more important part is the abstraction of computation as a first-order phenomenon, a "theory of the feasible", as it were. 

Consider the example of privacy. Privacy is a concern that arises from access to data, and is a core component of any "big data" discussion. What differential privacy achieved was to frame the problem computationally, as both a definition of what's feasible to protect, and as a set of mechanisms to guarantee protection, and guarantee what cannot be protected.

Similarly, I'm interested in other problems arising out of our need to interact with data that can be framed abstractly in "the language of the feasible". There's work on how to value published data, and how to price it. There's work on how to verify computations, and how to do computations securely. There's work on how to understand and interpret data analysis. And then of course there's the large body of work on how to manage and compute efficiently with data under brand new models of computation. 

The "language of the feasible" is our not-so-secret weapon in defining abstractions: it's more than just resource allocation and management, and it's what gives theoryCS power to speak to other domains. 

Simons Institute opening, with pictures.

Today was the official kickoff for the Simons Institute, as well as the start of the two special programs in big data and real analysis. For the last few days I've been busy getting my paperwork organized over at Calvin Hall, which is a beautifully redone circular building named after the Nobel Laureate and Berkeley professor (more on the building here).

The inside is very conducive to collaborative work. The offices are organized around the periphery of the building, and are functional, but not overly so. The idea is that people will congregate in the large interior open spaces that are covered with whiteboards and comfy chairs.

This is what the interior looks like: (apologies for the picture quality)

The second floor open lounge

Comfy chairs in front of a whiteboard

even more chairs and more whiteboards

Let us not forget the very fancy coffee machine (which makes nice espresso)

and of course you need your Simons Institute mug to drink it in.

This is the main auditorium for workshops, on the first floor.

The next plan is to pave the outer walls of the building at ground level with chalkboards, so people can think and chat outside as well as inside. Ah, Berkeley weather. I'm told the boards are already there, and just need to be installed, so I hope to have pictures soon. 

There are 93 visitors between the two programs (53/39 by my rough count) which includes 22 Fellows. Offices are either two or three-person, and there are some large cubicle spaces with 7+ inhabitants. The visitors are all on the second and third floors of the building, which both have large open areas (the pictures above are from the second floor). 

The Sa-battle-cal starts..

I'm off on sabbatical, and we (two cars, two adults, two children and one cat) just started the long drive to Berkeley from SLC. This has turned out to be more exciting than I anticipated...

Our original plan was to drive 4 hours each day, making up the 12 hour drive to Berkeley in three days. With two drivers for two cars, this seemed like the best option to prevent us from getting over-tired.

Right at Wendover (Las Vegas for poor people!), about halfway on our first leg, my car broke down. Thankfully, I was able to coast it to a mechanic's shop just off the highway as we entered town. I had no clue what the problem was, and the mechanic wouldn't be able to take a look at it for a few hours (this is the week of the Bonneville races on the salt flats).

So I called my mechanic back in Salt Lake, and described the problem to him. He diagnosed it on the spot as a faulty ignition coil, which is apparently an easy part to procure and replace.... if you're near a dealership.

Which I was not...

He also needed me to figure out which coil was failing, which needed a computer scanner, which needed a mechanic.

So....

Here's what needed to happen, in short order. It was now 5pm. We (my wife and I) needed to

• get the mechanic to at least scan the car to get the appropriate error codes
• Call the car parts store (closing at 6) to see if they could procure the needed parts
• Find a hotel in Wendover (did I mention this was the week of the Bonneville Races, and almost everything in town was booked?)
• Change our reservations downstream because we were stuck in Wendover. 

Thankfully, through a series of small miracles and the generosity of many strangers and non-strangers, we managed to get all of this done. My mechanic even offered to to walk me through the installation myself once I did the appropriate Youtube self-study (MOOCs FTW !!)

Long story short, it's now day II of our trek. We doubled up the driving on day II to make up for lost time, and we're back on schedule (minus one set of car keys that I managed to lose in all the hurry). 

So far, this sabbatical is certainly not relaxing. 

p.s Shout out to Utah Imports of SLC, and S&R auto repair in Wendover. 

p.p.s I-80 through Nevada is one of the most mind-numbingly boring drives imaginable. 

Hi ho, hi ho, it's off to sabbatical we go...

It is now 7 days and counting before I head off on sabbatical, not to return till August 2014. I'll be heading to the Simons Institute to think big thoughts about the theory of data, (or was it big data about theory, or maybe just the theory of big data). After that, I'll be enjoying the fine life at Google for a semester, followed by a visit to MADALGO in Aarhus (because big data in Europe just tastes better, you know).

I've been using this summer to nurse my psychic wounds from six years of the grind, and gently slide into sabbatical mode. The rush of joy that comes everytime I delete a departmental email without reading beyond the subject tells me I'm ready :).

So far, advice I've received on how to conduct myself during a sabbatical includes:

• Don't plan too much
• Work very hard, but on something other than your current research
• Have an adventure, and if work happens, don't blame yourself. 
• Say NO repeatedly (this also applies to life post-tenure, apparently). I maybe took this advice a little too literally and managed to decline a review request in about 0.5 seconds, which surprised (and possibly annoyed) the editor who had made the request. 
• Do something different (or do something that you've been meaning to do for years but never got a chance to). 

What else ? 

FSTTCS in December

At this point, you're probably wondering: exactly how much more coffee do I need to infuse into my system to get my 1/3/10  papers submitted to SODA before the deadline ? Do your stomach lining (and your adenosine receptors) a favor and consider submitting to FSTTCS: the abstracts deadline is Jul 8, and the submission deadline is July 15. You get to go to Guwahati in December and you might even get to stay here:

SODA 2014 abstract submission deadline approaching

+Chandra Chekuri informs us that the abstract submission deadline for SODA 2014 is approaching rapidly. Abstracts MUST be in by July 3 or else you cannot submit a full paper (by Jul 8).

For more information, visit the SODA site: http://siam.org/meetings/da14/submissions.php

Computational thinking in other disciplines.

While we wait for the (literal) flames to die down at the STOC business meeting (who'd have thought a two-tier PC would be so controversial), a thought on "computational thinking". 

I've been on PhD committees for students in other departments far removed from computer science. I'm there partly as an external person, and partly as someone who "understands computation" and can guide the student in a project that involves some nontrivial algorithmic thinking.

It's very striking to see how these students approach the notion of computing. They have strong engineering/math backgrounds, but they tend to view computational problems as black boxes for which the first idea that comes to mind is the correct answer. This is pernicious enough that when I try to nudge them to define the problem more generally, they have no idea what to do.

This is a common theme in disciplines that make use of computation. Everyone has their favorite biology story along these lines, but this article in Science magazine is a good example of the problem of scientists using code. In brief, they tend to use code as a blackbox without really understanding what the code does or why, or how to validate the results.

In my algorithms class, I emphasize the important of naming problems. Especially when one is trying to model a fuzzy real-world problem, it's very important to recognize named problems that might be hidden inside. But this very fundamental idea - that the problem comes first, and that by naming it we can recognize and understand this - is foreign to people not trained to think computationally. Rather, they think in terms of solutions, which is dangerous until they really know what they want to solve.

We talk a lot about computational thinking and the intellectual content of computer science. For anyone without CS training who wishes to make use of computational tools, this is one of the most important lessons to learn: how to name a problem.

And there you have it..

Time now to read this: "Why are associate professors so unhappy"

MOOCification and summer programs

I was walking across campus today and saw the usual crowds of high school and middle school students doing various summer camps (the U. does a GREAT - yes it's called GREAT - summer camp in robotics/graphics, for example).

In our MOOCified future where all classes are taught by "course assistants" who report to "quality assurance staff", will there still be a way for excited middle and high school students to come to a university campus and get an interactive hands-on education at a camp ? I don't doubt that Udacity (or Coursera, or edX) will be happy to spin off a junior varsity division for the high schoolers (and if you do, please note that I said it first). And that will be one more demographic that the university loses as our educational mission gets sliced and diced.